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Probiotic Contamination, Mislabeling and Recall Reports

What health bodies, a fatal contamination case, Health Canada recall notices and laboratory studies report about probiotic contamination and label errors, without naming brands.

Content last updated . This page has not been medically reviewed.

Urgent first

If a person who is immunocompromised, has a central line, or is a premature or very young infant develops fever, vomiting, bloody stools or seems seriously unwell after taking a probiotic, get urgent medical care; the NHS lists bloody diarrhoea and worry about a baby under 12 months among reasons for urgent advice. [1] In the US, call 911 in an emergency. If someone swallowed too much of any supplement, Poison Help is 1-800-222-1222 (US). Whether a premature infant receives any probiotic is a decision for the hospital team: the FDA warns that preterm infants given probiotics are at risk of invasive, potentially fatal disease. [2]

The short answer

Most laboratory studies find that many products match their labels, but some do not: reports include live counts below the label, wrong or missing species, extra strains, and, in rare documented cases, a harmful contaminant or a recall. This page describes what the sources found. It names no products, and the studies are snapshots that cannot rank or clear any product.

Evidence labels used here: mixed, evidence of harm (documented case), and Proper evidence not found.

What health bodies say

  • NCCIH (US) says some probiotic products have been reported to contain microorganisms other than those on the label, and in some instances these contaminants may pose serious health risks. [3]
  • The NHS (UK) says probiotics are generally classed as food rather than medicine, so we cannot always be sure a product contains the bacteria stated on the label. [4]
  • In its 2023 statement on preterm infants, the FDA (US) said unapproved probiotic products have not been evaluated for compliance with its manufacturing and testing standards for drugs, including testing for other organisms. [5]

A documented contamination case

In 2014 a hospital in Connecticut reported a fatal gastrointestinal mucormycosis (a rare mould infection) in a preterm infant who had received a probiotic dietary supplement powder for 7 days. Unopened containers from the same lot grew Rhizopus mould, which CDC confirmed as Rhizopus oryzae, the same species found in the infant's tissue. The manufacturer recalled several lots, and CDC found no additional infant cases. [6]

Recall notices in Health Canada's database

We read three Health Canada recall notices for probiotic capsules. We did not do a complete search of recall databases, so this is not a full list. We do not name the products.
YearIssue stated in the noticeRecall classNotice
2023Bacteria content below specification in the affected lotType IIRA-73064 [7]
2024Bacterial content out of specification in the affected lotType IIRA-75570 [8]
2025Affected lot contains undeclared probiotic strains, zinc and selenium that may pose a risk to healthType IIIRA-77967 [9]

Each notice tells people to verify whether their product is affected, to consult a health care provider before discontinuing use or with concerns, and to report side effects to Health Canada. [9][8][7] For the FDA, we found one 2023 statement that a probiotic product sold for preterm infants had been voluntarily recalled; we did not read the recall notice itself. [5] Proper evidence not found: a US recall list for probiotics from the FDA, which we did not search.

What laboratory studies of marketed products found

StudyFindingLabel
2016, popular US products, sequencingProducts adhered to ingredient claims, with a few naming discrepancies; one product had an apparent Enterococcus contaminant in two of three lots; one was inaccurate in viability. [10]Mixed
2016, 52 supplements33% were below label claim for live counts before expiry; 58% had a correctly labeled classification. [11]Mixed
2019, 17 products from the China marketNo contaminant identified; 29.41% had inaccurate or lower CFU counts, 23.52% inaccurate classification. [12]Mixed
2022, marketed supplementsThe authors report almost none met label claim, 11% had no viable cells and 27% showed significant batch-to-batch variation. [13]Reported label problems
2025, 17 infant productsOver 82% of bacterial DNA matched labeled species; fungal DNA found was not viable. [14]Mixed

The samples, countries and methods differ, so results are not comparable across studies. Several used sequencing, which detects DNA but does not by itself show a living contaminant.

What this does and does not mean

An accurate label does not show that a strain works; a recalled lot says nothing about other lots or products. For people at higher risk of infection, label problems matter more because the product contains live organisms. The NCCIH advises consulting a health care provider before a probiotic supplement. [3] Practical steps that follow from the sources: check the product against recall notices from the regulator where you live, keep the lot number, and report side effects (see side effects and reporting). For how testing marks are described see quality testing and certifications, and for a longer lab-study review see label accuracy and third-party testing. To read a label see how to read a probiotic label. For serious infections linked to probiotics see probiotics and bloodstream infection.

Frequently asked questions

Have probiotics been contaminated with mould?

Yes, in one documented 2014 case a probiotic powder lot grew Rhizopus, and a premature infant died of mucormycosis; the lots were recalled. [6]

Do probiotic products always match their labels?

No. Studies vary: one found 33% of products below the label's live count, another found most bacterial DNA matched the label. [11][14]

What does a Health Canada probiotic recall usually say?

The notices we read cited bacterial content below or outside specification, or undeclared strains, zinc and selenium, and asked people to check their lot. [9][8][7]

Should I stop a recalled probiotic?

Health Canada's notices say to consult your health care provider before discontinuing use or with any concerns. [8] Never stop a prescribed medicine without the prescriber.

Does third-party testing remove the risk?

Proper evidence not found. We read no source showing that testing marks eliminate contamination; they address identity, count or contaminants in tested lots.

References
  1. NHS (UK). Diarrhoea and vomiting. Page last reviewed 21 December 2023. Read 2026-10-22.
  2. US Food and Drug Administration. Risk of Invasive Disease in Preterm Infants Given Probiotics Formulated to Contain Live Bacteria or Yeast. Safety communication, 29 September 2023. Read 2026-10-22.
  3. NCCIH (US National Center for Complementary and Integrative Health). Probiotics: Usefulness and Safety. Last updated August 2019. Read 2026-10-22.
  4. NHS (UK). Probiotics. Page last reviewed 24 November 2022. Read 2026-10-22.
  5. US Food and Drug Administration. FDA Raises Concerns About Probiotic Products Sold for Use in Hospitalized Preterm Infants. News release, 26 October 2023. Read 2026-10-22.
  6. Vallabhaneni S, et al. Notes from the field: fatal gastrointestinal mucormycosis in a premature infant associated with a contaminated dietary supplement, Connecticut, 2014. MMWR Morb Mortal Wkly Rep. 2015;64(6):155-156. Read 2026-10-22.
  7. Health Canada. Recall notice RA-73064, probiotic capsule (bacteria content below specification). Published 1 March 2023, Type II recall. Read 2026-10-22.
  8. Health Canada. Recall notice RA-75570, probiotic capsule (bacterial content out of specification). Published 27 May 2024, Type II recall. Read 2026-10-22.
  9. Health Canada. Recall notice RA-77967, probiotic capsule (affected lot contains undeclared probiotic strains, zinc and selenium). Published 22 August 2025, Type III recall. Read 2026-10-22.
  10. Patro JN, et al. Culture-independent metagenomic surveillance of commercially available probiotics with high-throughput next-generation sequencing. mSphere. 2016. Abstract read 2026-10-22.
  11. Morovic W, et al. Genotyping by PCR and high-throughput sequencing of commercial probiotic products reveals composition biases. Front Microbiol. 2016. Abstract read 2026-10-22.
  12. Viability and composition validation of commercial probiotic products by selective culturing combined with next-generation sequencing. Microorganisms. 2019. Abstract read 2026-10-22.
  13. Aziz G, et al. Compositional quality and possible gastrointestinal performance of marketed probiotic supplements. Probiotics Antimicrob Proteins. 2022. Abstract read 2026-10-22.
  14. Genomic interrogation of commercial infant probiotic products for label accuracy. Pediatr Res. 2025. Abstract read 2026-10-22.
Education, not medical advice. This page is for general information. It does not diagnose or treat any condition and is not a substitute for care from a qualified health professional. Natural does not automatically mean safe. Ask a clinician or pharmacist before changing your care, especially if you take medication, are pregnant or breastfeeding, or have a health condition.